To view your CT data in 3D go to Plugins > Volume Viewer.dicom image stacks where the metadata will also be imported into FIJI You can view data about the image stack by selecting Image > Show Info….The small “play” icon in the bottom left of the viewer will automate the slices.Note that the slice number changes as you move through the stack, and this corresponds to the specific image in the folder containing your image stack The stack will appear, and you can now scroll through it using either your mouse or the slider bar at the bottom of the viewer.Generally, you will not need to check the other boxes. “Sort names numerically” should be checked, whereas all other options are unchecked-you may select the other options, which will be executed when the image stack is loaded (note, such changes will not alter the original image stack).The window that pops up will provide information about the image sequence to be loaded-confirm that the number of images matches the stack you intend to load.Note that all data for a single image stack should be in a single folder, as FIJI will only allow you to select one file and will then load all.
Select File > Import > Image Sequence from the menu bar.Instructions for Working with Image Stacks in FIJI ( FIJI Is Just ImageJ) Here is a link to the downloadable PDF of the file: Working with Data in Fiji Paul Gignac, an Associate Professor at the Department of Anatomy & Cell Biology at Oklahoma State University Center for Health Sciences in Tulsa, Oklahoma, created a list of instructions for working with image stacks in FIJI (FIJI Is Just ImageJ) with editing and additions by Dr.
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